Over 3 Lakh GST Amnesty Applications Filed Key Update from GSTN
Over 3 lakh taxpayers have already filed their applications under the GST Amnesty Scheme 2025, triggering a rush on the GST portal. In response to complaints about filing glitches and system errors, the GST Network (GSTN) has now issued a formal advisory to assist taxpayers.
This advisory becomes crucial as the last date to avail the benefits under the GST amnesty scheme draws near.
What is the GST Amnesty Scheme 2025?
The amnesty scheme offers waiver or reduction of late fees for taxpayers who failed to file returns under the GST law between FY 2017–18 and 2019–20. It was notified through Notification No. 04/2024–CT dated 05.01.2024, and later extended under Notification No. 09/2024–CT.
GSTN Advisory: Common Portal Issues and Solutions
Key Errors Faced by Taxpayers:
- Error in Table 6A of GSTR-1: Unable to proceed to file returns
- Auto-population delays in liability fields
- GSTR-9/9C access issues for earlier years
- Late fee not reflecting as waived even after conditions met
GSTN Advisory Solutions:
- Wait for System Sync: If you’ve submitted but can’t proceed, wait 24–48 hours.
- Clear Cache/Use Incognito Mode: Solves many GSTR-1/3B errors.
- Raise a Ticket on selfservice.gstsystem.in with screenshots.
- Use Offline Tool for GSTR-9/9C if the portal is not loading.
Steps to File Amnesty Application Smoothly
| Step | Action |
|---|---|
| 1 | Login to GST portal |
| 2 | Navigate to the applicable return form (GSTR-1, 3B, etc.) |
| 3 | Enter details accurately |
| 4 | Pay reduced late fees (if applicable) |
| 5 | Submit and file return |
Note: Reduced late fees will auto-apply if return is filed within the amnesty window.
Expert Tip: Don’t Wait Till Deadline
“Many taxpayers are waiting till July to file under the scheme. But technical glitches peak near deadlines. File early to avoid rejection or late fee errors,” says a senior GST consultant.
Legal References
- Section 128A of CGST Act (inserted via Finance Act, 2023)
- Notification No. 04/2024–CT & 09/2024–CT
- CBIC Circular No. 248/05/2025-GST, issued for clarification
Why This Matters
- Over 3 lakh taxpayers have responded — a clear sign of pent-up demand
- Revenue implications are significant as non-filers regularize their compliance
- Missed deadline means loss of full waiver — liability and late fees revive in full
Frequently Asked Questions (FAQs)
Q1. What if the portal is not showing reduced late fee?
A: Try using incognito mode and refresh after 48 hours. If issue persists, raise a support ticket.
Q2. Can I file nil return under the amnesty?
A: Yes, nil returns are eligible. Late fee will be reduced accordingly.
Q3. What’s the last date for filing under the scheme?
A: The extended due date is 30th June 2025, unless further notified.
Final Takeaway: File Early, Avoid Tech Delays
With lakhs already applying and the GST portal under load, early filing is the smartest strategy. Don’t wait for the last week — act now to ensure you benefit from the reduced compliance burden.
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Summary
Over 3 lakh GST amnesty applications have been filed as of June 2025. Facing portal issues? GSTN has issued an advisory to address common filing errors. File early, avoid glitches, and ensure reduced late fees under the GST Amnesty Scheme 2025 before the 30 June deadline.